GmSPL9a
Gene Accession number Functional annotation Reference Controlling trait P-value Haplotype 688Coincidence Sequence
GmSPL9a Glyma.02G177500 squamosa promoter binding protein-like 9 Bao et al. 2019;  Cao et al. 2015b Yield (plant architecture) 0.002847 freq hap Chr02__29536270 yeild     FAM TCTGCCATAGCGAGAGGTTAATAC
285 Hap1 C LOW 169/217 77.88% HEX TCTGCCATAGCGAGAGGTTAATAT
96 Hap3 T HIGH 185/244 75.82% R AAACGTAGCTGCCGCAAGC
sample_name Chr02__29536270 sample_name FAM sample_name Chr02__29536270 sample_name HEX
369 C 390 C:C 401 T 438 T:T
390 C 405 C:C 432 T 458 T:T
405 C B4 C:C 438 T C2 T:T
411 C C10 C:C 458 T C25 T:T
413 C C15 C:C A3 T C26 T:T
B4 C C32 C:C C1137 T C36 T:T
C10 C C38 C:C C2 T C6 T:T
C1124 C C4 C:C C25 T C9 T:T
C15 C C42 C:C C26 T CX105 T:T
C22 C C43 C:C C36 T CX124 T:T
C32 C C881 C:C C40 T CX134 T:T
C38 C CX103 C:C C6 T CX143 T:T
C4 C CX110 C:C C8 T CX144 T:T
C42 C CX113 C:C C884 T CX145 T:T
C43 C CX12 C:C C9 T CX147 T:T
C7 C CX123 C:C CX101 T CX149 T:T
C881 C CX13 C:C CX105 T CX156 T:T
CX103 C CX132 C:C CX124 T CX162 T:T
CX104 C CX137 C:C CX130 T CX163 T:T
CX108 C CX140 C:C CX131 T CX17 T:T
CX110 C CX141 C:C CX134 T CX171 T:T
CX113 C CX142 C:C CX143 T CX172 T:T
CX119 C CX151 C:C CX144 T CX183 T:T
CX12 C CX152 C:C CX145 T CX186 T:T
CX123 C CX154 C:C CX147 T CX187 T:T
CX127 C CX155 C:C CX148 T CX193 T:T
CX13 C CX158 C:C CX149 T CX194 T:T
CX132 C CX159 C:C CX156 T CX205 T:T
CX137 C CX160 C:C CX162 T CX206 T:T
CX138 C CX161 C:C CX163 T CX207 T:T
CX139 C CX169 C:C CX168 T CX209 T:T
CX140 C CX170 C:C CX17 T CX213 T:T
CX141 C CX175 C:C CX171 T CX222 T:T
CX142 C CX178 C:C CX172 T CX228 T:T
CX146 C CX179 C:C CX183 T CX251 T:T
CX150 C CX18 C:C CX186 T CX26 T:T
CX151 C CX180 C:C CX187 T CX271 T:T
CX152 C CX181 C:C CX19 T CX273 T:T
CX153 C CX184 C:C CX192 T CX274 T:T
CX154 C CX185 C:C CX193 T CX28 T:T
CX155 C CX20 C:C CX194 T CX283 T:T
CX157 C CX204 C:C CX205 T CX29 T:T
CX158 C CX218 C:C CX206 T CX30 T:T
CX159 C CX220 C:C CX207 T CX308 T:T
CX160 C CX221 C:C CX209 T CX316 T:T
CX161 C CX24 C:C CX210 T CX318 T:T
CX164 C CX247 C:C CX213 T CX319 T:T
CX169 C CX248 C:C CX22 T CX323 T:T
CX170 C CX256 C:C CX222 T CX324 T:T
CX173 C CX257 C:C CX225 T CX327 T:T
CX175 C CX258 C:C CX228 T CX4 T:T
CX178 C CX259 C:C CX235 T CX47 T:T
CX179 C CX261 C:C CX250 T CX50 T:T
CX18 C CX268 C:C CX251 T CX53 T:T
CX180 C CX270 C:C CX253 T CX54 T:T
CX181 C CX272 C:C CX26 T CX6 T:T
CX184 C CX275 C:C CX271 T CX66 T:T
CX185 C CX276 C:C CX273 T CX78 T:T
CX20 C CX281 C:C CX274 T CX84 T:T
CX201 C CX285 C:C CX277 T CX94 T:T
CX203 C CX287 C:C CX28 T CX96 T:T
CX204 C CX290 C:C CX280 T E2 T:T
CX21 C CX291 C:C CX283 T E4 T:T
CX218 C CX298 C:C CX29 T H751 T:T
CX220 C CX3 C:C CX294 T JL001 T:T
CX221 C CX300 C:C CX30 T JL003 T:T
CX230 C CX305 C:C CX308 T JL005 T:T
CX24 C CX309 C:C CX313 T JL006 T:T
CX242 C CX310 C:C CX316 T JL007 T:T
CX247 C CX311 C:C CX318 T JL008 T:T
CX248 C CX312 C:C CX319 T JL009 T:T
CX249 C CX314 C:C CX323 T JL012 T:T
CX256 C CX315 C:C CX324 T JL013 T:T
CX257 C CX317 C:C CX327 T JL017 T:T
CX258 C CX32 C:C CX4 T JL020 T:T
CX259 C CX320 C:C CX47 T JL021 T:T
CX261 C CX321 C:C CX50 T JL026 T:T
CX262 C CX322 C:C CX53 T JL029 T:T
CX264 C CX326 C:C CX54 T JL030 T:T
CX268 C CX328 C:C CX6 T JL031 T:T
CX269 C CX33 C:C CX61 T JL033 T:T
CX27 C CX34 C:C CX63 T JL034 T:T
CX270 C CX35 C:C CX66 T JL037 T:T
CX272 C CX36 C:C CX78 T JL038 T:T
CX275 C CX38 C:C CX80 T JL042 T:T
CX276 C CX49 C:C CX84 T JL044 T:T
CX278 C CX5 C:C CX91 T JL045 T:T
CX281 C CX57 C:C CX94 T JL046 T:T
CX282 C CX71 C:C CX96 T JL050 T:T
CX285 C CX74 C:C E2 T JL052 T:T
CX287 C CX76 C:C E4 T JL053 T:T
CX290 C CX92 C:C H681 T JL055 T:T
CX291 C CX93 C:C H751 T JL057 T:T
CX292 C H166 C:C JL001 T JL058 T:T
CX293 C H542 C:C JL003 T JL062 T:T
CX298 C H660 C:C JL004 T JL064 T:T
CX299 C H750 C:C JL005 T JL066 T:T
CX3 C H760 C:C JL006 T JL067 T:T
CX300 C JL010 C:C JL007 T JL068 T:T
CX304 C JL016 C:C JL008 T JL069 T:T
CX305 C JL018 C:C JL009 T JL072 T:T
CX307 C JL022 C:C JL012 T JL076 T:T
CX309 C JL023 C:C JL013 T JL079 T:T
CX310 C JL036 C:C JL017 T JL080 T:T
CX311 C JL041 C:C JL020 T JL081 T:T
CX312 C JL047 C:C JL021 T JL082 T:T
CX314 C JL048 C:C JL024 T JL084 T:T
CX315 C JL051 C:C JL026 T JL085 T:T
CX317 C JL060 C:C JL027 T JL086 T:T
CX32 C JL063 C:C JL028 T JL089 T:T
CX320 C JL065 C:C JL029 T JL090 T:T
CX321 C JL073 C:C JL030 T JL091 T:T
CX322 C JL075 C:C JL031 T JL095 T:T
CX326 C JL083 C:C JL032 T JL096 T:T
CX328 C JL092 C:C JL033 T JL097 T:T
CX33 C JL106 C:C JL034 T JL098 T:T
CX34 C JL212 C:C JL035 T JL099 T:T
CX35 C JL217 C:C JL037 T JL100 T:T
CX36 C JL220 C:C JL038 T JL101 T:T
CX38 C JL221 C:C JL042 T JL102 T:T
CX49 C JL222 C:C JL044 T JL103 T:T
CX5 C JL223 C:C JL045 T JL107 T:T
CX57 C JL227 C:C JL046 T JL108 T:T
CX71 C JL229 C:C JL050 T JL113 T:T
CX74 C JL233 C:C JL052 T JL162 T:T
CX76 C JL235 C:C JL053 T JL192 T:T
CX83 C JL238 C:C JL055 T JL209 T:T
CX92 C JL239 C:C JL056 T JL213 T:T
CX93 C JL240 C:C JL057 T JL214 T:T
CX95 C JL241 C:C JL058 T JL215 T:T
H166 C JL247 C:C JL059 T JL219 T:T
H542 C JL249 C:C JL062 T JL224 T:T
H660 C JL253 C:C JL064 T JL225 T:T
H750 C JL257 C:C JL066 T JL226 T:T
H760 C JL260 C:C JL067 T JL228 T:T
JL002 C JL271 C:C JL068 T JL230 T:T
JL010 C JL273 C:C JL069 T JL231 T:T
JL014 C JL283 C:C JL072 T JL232 T:T
JL015 C JL284 C:C JL076 T JL234 T:T
JL016 C JL287 C:C JL079 T JL242 T:T
JL018 C JL288 C:C JL080 T JL243 T:T
JL019 C JL290 C:C JL081 T JL245 T:T
JL022 C JL291 C:C JL082 T JL246 T:T
JL023 C JL292 C:C JL084 T JL251 T:T
JL025 C JL294 C:C JL085 T JL252 T:T
JL036 C JL295 C:C JL086 T JL254 T:T
JL039 C JL296 C:C JL088 T JL255 T:T
JL041 C JL297 C:C JL089 T JL256 T:T
JL043 C JL299 C:C JL090 T JL259 T:T
JL047 C JL304 C:C JL091 T JL262 T:T
JL048 C JL312 C:C JL095 T JL263 T:T
JL049 C JL314 C:C JL096 T JL264 T:T
JL051 C JL316 C:C JL097 T JL265 T:T
JL054 C JL317 C:C JL098 T JL267 T:T
JL060 C JL318 C:C JL099 T JL268 T:T
JL063 C JL319 C:C JL100 T JL269 T:T
JL065 C JL321 C:C JL101 T JL270 T:T
JL070 C JL324 C:C JL102 T JL272 T:T
JL073 C JL325 C:C JL103 T JL274 T:T
JL075 C JL326 C:C JL104 T JL277 T:T
JL083 C JL328 C:C JL105 T JL278 T:T
JL087 C JL330 C:C JL107 T JL279 T:T
JL092 C JL334 C:C JL108 T JL280 T:T
JL106 C JL339 C:C JL113 T JL281 T:T
JL208 C JL341 C:C JL162 T JL282 T:T
JL212 C JL342 C:C JL192 T JL285 T:T
JL217 C JL345 C:C JL209 T JL289 T:T
JL218 C JL346 C:C JL213 T JL293 T:T
JL220 C JL348 C:C JL214 T JL300 T:T
JL221 C     JL215 T JL301 T:T
JL222 C     JL219 T JL302 T:T
JL223 C     JL224 T JL303 T:T
JL227 C     JL225 T JL305 T:T
JL229 C     JL226 T JL309 T:T
JL233 C     JL228 T JL310 T:T
JL235 C     JL230 T JL311 T:T
JL236 C     JL231 T JL315 T:T
JL238 C     JL232 T JL327 T:T
JL239 C     JL234 T JL332 T:T
JL240 C     JL237 T JL333 T:T
JL241 C     JL242 T JL336 T:T
JL247 C     JL243 T JL337 T:T
JL249 C     JL244 T JL340 T:T
JL253 C     JL245 T JL343 T:T
JL257 C     JL246 T JL344 T:T
JL260 C     JL248 T    
JL266 C     JL251 T    
JL271 C     JL252 T    
JL273 C     JL254 T    
JL275 C     JL255 T    
JL276 C     JL256 T    
JL283 C     JL258 T    
JL284 C     JL259 T    
JL286 C     JL261 T    
JL287 C     JL262 T    
JL288 C     JL263 T    
JL290 C     JL264 T    
JL291 C     JL265 T    
JL292 C     JL267 T    
JL294 C     JL268 T    
JL295 C     JL269 T    
JL296 C     JL270 T    
JL297 C     JL272 T    
JL299 C     JL274 T    
JL304 C     JL277 T    
JL308 C     JL278 T    
JL312 C     JL279 T    
JL313 C     JL280 T    
JL314 C     JL281 T    
JL316 C     JL282 T    
JL317 C     JL285 T    
JL318 C     JL289 T    
JL319 C     JL293 T    
JL321 C     JL298 T    
JL324 C     JL300 T    
JL325 C     JL301 T    
JL326 C     JL302 T    
JL328 C     JL303 T    
JL329 C     JL305 T    
JL330 C     JL309 T    
JL331 C     JL310 T    
JL334 C     JL311 T    
JL339 C     JL315 T    
JL341 C     JL323 T    
JL342 C     JL327 T    
JL345 C     JL332 T    
JL346 C     JL333 T    
JL348 C     JL336 T    
JL337 T    
JL340 T    
JL343 T    
JL344 T    
JL347 T    
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